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Using a SAM file produced from RUM 1.11, I'm getting a strange error; the same error happens with SortSam and ValidateSamFile. According to the SAM specifications, this CIGAR string shouldn't be possi…
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Related to /pboriginal/submit_data/.
**ADF's observation:**
https://peanutbase.org/submit_data
may be different than what we've now got linked from
https://legacy.legumeinfo.org/submit_data
(and …
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Daedalus should support filtering and sorting pools. It should have some sane defaults for filters (hide private, saturated, and pools lacking metadata), but power users should be able to choose a dif…
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## User Story
As a hub operator wishing to serve connected DFSPs by giving them visibility of their liquidity balances", because it's the hub operator doing it, at least until the Participant Portal …
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When htslib reads a BAM record, if there is no cigar string the 'unmapped' flag is set and a warning message sent to stderr. This is contrary to the SAM specification, which says that
> "Bit 0x4 is …
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### Describe your idea/feature/enhancement
Allow specification of parameters that should apply to all (or multiple) **_environments_** in AWS SAM CLI configuration file (samconfig.toml).
This wo…
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One problem I have with the BAM/SAM format is that the reference is not kept with the read file. You allude to this in your paper. Keeping old references around, especially for poorly characterized…
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This issue is open to document some discrepancies, mismatches, and unknowns about the many constants used in the Lowe et al. 2019 example.
- [ ] The specification of the aerosol mass compositions …
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### Describe your idea/feature/enhancement
Many CLI commands can interpret `-` as a stdin/out. In `aws-cli`, `s3 cp` can use `-` as a stdin/out.
```
$ BUCKET=
$ echo helloworld | aws s3 …
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Release Steps Sign Off
### Features / Specifications
### Definition of Done
- [x] QA signs off on specific build in regression testing: current for `3.6.5`, build number: `de28495)`
- […