-
Serialize SBML ODEs to diffrax/Jax format.
-
Hi,
I just tried to upload the WormJam.xml to Metexplore and it failed. Fabien and I run the http://sbml.org/Facilities/Validator/section-print-result.jsp on it and throws some errors. @JakeHattwell …
-
When I submit a model for validation online (http://sbml.org/Facilities/Validator/) using drag and drop, it verifies ok, with some warnings (fbc model; no initial value assignments for species).
Wh…
-
### Description of the issue:
When searching for inflow reactions, only irreversible inflow reactions are included in the output. When looking for outflow reaction, both irreversible outflow and reve…
-
from issue #7
**Resources:**
- https://subcellular-bsp-epfl.apps.hbp.eu/home/
- https://subcellular-bsp-epfl.apps.hbp.eu/static/docs.html
**Info:**
- on [this page](https://subcellular-bsp-ep…
-
SBML model file -> BioRECIPE
I attached the sbml file (named map_mapk_2_4.sbml) I downloaded from Cell Collective and I used CellDesigner 4.4.2 to load and export the sbml file (using level 2 version…
-
With SBML removed (#3) we need a simple scheme to read/write models
-
SBML documentation is outdated on https://cobrapy.readthedocs.io/en/stable/io.html. E.g.,
* remove mentioning of lxml
* document python-libsbml correctly
* SID not documented correctly (patterns…
-
Hello FluxML dev team,
I read the specifications for FluxML and I have a very naive question: why didn't you choose to make an [SBML package](http://sbml.org/Documents/Specifications#SBML_Level_3_P…
-
tellurium appears to have limits on the attributes that can be changed via `sedml:changeAttribute`. I'm guessing this applies to `computeChange.target`, `setValue.target`, and `variable.target` as wel…