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hello，Michael
Thanks for your wonderful software.
In recent days, I want to use it for my analysis. I had installed it very well follow your instruction.
```
$REforge.py -h
usage: REforge.py [-…
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It looks like MEME now skips over providing sequences from the training set when the number of sequence is greater than the argument to `-brief` (1000 by default), which is documented to do the follow…
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Dear all,
When I use the gbk result generated by the PROKKA software as an antismash input, the following warnings and errors are displayed:
```
WARNING 27/08 09:38:24 Regenerating translati…
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It would be a nice feature to draw the structural features of transposable elements such as TIRs (Terminal invertead repeats), LTRs (Long Terminal Repeats), and TE related genes (polyproteins) in jBro…
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Hi,
I have tried to run modisco-lite on some of my sequences but unofortunately I do not get any motifs back.
I have tried to generated a one-hot encoded sequences and numpy array from both the …
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While performing motif scaffolding with RFdifussion, I have noticed that **the fixed segments in the generated PDB files do not exactly match those in the reference PDB file**. For example, I'm using …
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### Setup
I am reporting a problem with Biopython version, Python version, and operating system as follows:
Biopython: 1.78
python: 3.8.3 (default, May 19 2020, 18:47:26)
OS: CPython/Linux-5.4.7…
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I am trying to use mCross to detect RNA motifs for an RBP using the alternative approach that skips the top n-mer detection step. I provide FASTA sequences for background and peak signals directly. Ho…
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In the white paper "Matrix Profile XX: Finding and Visualizing Time Series Motifs of All Lengths using the Matrix Profile", section 3 demonstrates the Pan Matrix Profile with string data, however this…
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• Develop your modification and motif analysis script and XML files in GitHub,
and in a new issue on GitHub
• record link to modification and motif script
https://github.com/wangna62691/PacBio_Asse…