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[SCINA](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6678337/)
The tutorial can be found here: https://github.com/jcao89757/SCINA
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https://github.com/MaayanLab/signature-commons-ui/blob/d30d05cb1584c92267a7e3adcb011c025aa4fe97/components/Options.js#L143-L155
Same thing here:
https://github.com/MaayanLab/signature-commons-ui/b…
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Hello! Thank you for building the GEDIT program. Can you give an example for how to use scripts to generate signaturematrix? I don't know whether I have got the right way to use getSigGenesModal.py
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Dear author,
![image](https://github.com/aertslab/pySCENIC/assets/44579368/acca66f2-df2c-4ea1-8fea-06f61f868642)
```
Traceback (most recent call last):
File "/work/home/acp0wc9bsx/miniconda3/e…
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Hi Hana,
Do you have a documentation for AutoGeneS+?
I optimized my single cell data of 13 cell types and found highly correlated cell types. I ran the optimization on those cell types thus addi…
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Hey,
When I used the testing data provided in the github to run the scID, but it returns the following error.
Would you help figure it out?
Best wishes,
Haidong
> scID_output
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Hello,
I have some clusters with differentially expresses genes generated using Seurat. I also have a highly curated gene list and I wish to perform enrichment analysis using these on each cluster …
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Hi there,
I used DWLS to predict the composition and failed to identify T cells in the Visium data. The single-cell dataset I used comprises enough cell types that could exist in the Visium samples…
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### Need
As a clinical geneticist I would like to be able to use COSMIC signatures, which can identify signatures of for instance DNA-repair mutations, which would lend confidence to the impact of …
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Hi SignatureAnalyzer Team,
Thank you for the impressive work and continuous maintenance of the tool!
I was interested in running this on very large single-cell RNA-seq datasets, so I tested on …