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### Is there an existing issue for this?
- [X] I have searched the existing issues
### New feature
- Somewhat related to #227
- Add a flag to `nipoppy run` (and `nipoppy bidsify`) which will make …
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Hi,
I am using a large server cluster (SGE) with more than 50 nodes to run Verkko computations. Each node is equipped with 72 CPUs and ample memory. **I’m trying to figure out how to utilize all 50…
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Hello
I am running the following SLRUM script on HPC:
```bash
#!/bin/sh
#SBATCH --job-name=kmermono
#SBATCH --time=1-00:00:00
#SBATCH --mem=250g
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=60
…
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**Snakemake version**
v7.32.3
**Describe the bug**
I want to set up different temp folders depending on where the workflow is being run and the amount of data. For example:
1. when…
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Dear author,
When I run the command: ```snakemake -p -s /data/01/p1/user208/wn/phyloacc-out-08-25-2024.11-57-51/phyloacc-out-08-26-2024.08-31-18/phyloacc-job-files/snakemake/run_phyloacc.smk --config…
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The slurm PLM component sets ```--mpi=none``` as part of the srun command used to launch the prted daemons.
On HPE Slingshot 11 networks where VNI credentials are enforced, this ends up in, effec…
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* CodeCarbon version: 2.5.0
* Python version: 3.11.7
* Operating System: Linux
### Description
I got these prints:
```
...
/bin/bash: line 1: scontrol: command not found
[codecarbon WARN…
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Does submitit support Slurm Heterogeneous Job?
If so, how can we submit heterogeneous job?
If not, could you enhance the code to support it?
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https://github.com/aiidateam/aiida-core/issues/5638#issue-1369918831
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Since SLURM is not installed on our supercomputing center, I cannot use command like scancel. I can use submitit to run a job and be able to monitor the progress from .out/.err files, but what comman…