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phyloacc
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PhyloAcc
PhyloAcc a software to detect the changes of conservation of a genomic region
GNU General Public License v3.0
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fix malloc free bugs
#69
xyz111131
opened
1 month ago
0
fixed bug in labeltree that resulted in identical labels, see #65
#68
gwct
closed
1 month ago
0
converging CNE doesn't seem good
#67
lnyawen
closed
1 month ago
6
misc bug fixes
#66
gwct
closed
1 month ago
0
two trees do not have the same topology
#65
chun-he-316
opened
2 months ago
12
readme updates
#64
gwct
closed
2 months ago
0
readme
#63
gwct
closed
2 months ago
0
readme
#62
gwct
closed
2 months ago
0
version string
#61
gwct
closed
2 months ago
0
readme
#60
gwct
closed
2 months ago
0
added config template
#59
gwct
closed
2 months ago
0
handle cases where both cl option and config file are not given
#58
gwct
closed
2 months ago
0
phyloacc_gt with "-r adaptive" encounter : ZeroDivisionError: division by zero
#57
zhou-sumei
closed
2 months ago
5
v2.3.0
#56
gwct
closed
2 months ago
0
Trees for individual CNEs
#55
gaurav-agavekar
closed
2 months ago
3
phyloacc_post.py getting hung up on inf and -inf values
#54
AlexWeitzel
closed
2 months ago
6
phyloacc_gt issues
#53
pedro-mmartins
closed
2 months ago
14
Walkthrough needed
#52
gwct
opened
1 year ago
0
Various option additions and bug fixes
#51
gwct
closed
1 year ago
0
Dollo
#50
xyz111131
closed
1 year ago
0
Error reading alignment
#49
francicco
closed
1 year ago
41
Need better error message and documentation about labeling input tree
#48
gwct
closed
1 year ago
1
Preparing input files
#47
francicco
closed
1 year ago
19
PackagesNotFoundError
#46
francicco
closed
1 year ago
10
PhyloAcc-ST Segmentation fault (core dumped)
#45
Simin-CHAI
closed
1 year ago
12
updating meta info
#44
gwct
closed
1 year ago
0
Minor tweaks to post output, fixed bug where post couldn't find the tree
#43
gwct
closed
1 year ago
0
**Error IO2: Error reading tree from file!
#42
YellowStar96
closed
1 year ago
6
Standard exception: basic_string::substr: __pos when running without an ID file
#41
gwct
closed
5 months ago
12
A couple of bug fixes in 2.1.0
#40
gwct
closed
1 year ago
0
Some more tree class testing and updating phyloacc_post.py
#39
gwct
closed
1 year ago
0
PLOT.genPlots(globs)：tkinter.TclError: unknown color name "white"
#38
1221li
closed
1 year ago
2
phyloacc_post.py: command not found
#37
gwct
closed
1 year ago
1
How to set cluster options about PBS?
#36
lnyawen
closed
1 year ago
13
Add scf options and refactor code, update readme
#35
gwct
closed
1 year ago
0
Is there any difference between PhyloAcc-GT and PhyloAcc-ST?
#34
dx-lzu
closed
1 year ago
1
Incorporate gene tree version codebase
#33
gwct
closed
2 years ago
0
Fix matplotlib-base incompatibilities
#32
gwct
closed
2 years ago
0
Fix bug for compilers pre g++ version 7, some more conda setup
#31
gwct
closed
2 years ago
2
Removal of data folders, clean Makefile
#30
gwct
closed
2 years ago
0
Repo reorganization for conda and multiple codebases
#29
gwct
closed
2 years ago
3
How to select convergent CNEs
#28
zzzchang
closed
1 year ago
3
PhyloAcc: SRC/profile.cpp:45: PhyloProf LoadPhyloProfiles(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string): Assertion `wholeline.length() == prof.G' failed.
#27
Rusfell
closed
1 year ago
1
Can PhyloAcc be used to analyse coding sequence alignments?
#26
KyleEwart
closed
2 years ago
2
What is the branch length and color plotted by plotZPost?
#25
binlu1981
closed
1 year ago
4
PhyloAcc_gBGC output misses logBF1 and logBF2
#24
Tkastylevsky
opened
3 years ago
0
Can i make phyloacc work faster?
#23
Yangcao-fz
closed
1 year ago
12
Data overflow in loading configurations
#22
Secretloong
closed
4 years ago
2
Is it necessary to add the ancestor's sequences?
#21
Secretloong
closed
4 years ago
2
Encoding missing data
#20
darencard
closed
4 years ago
2
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