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## Part 1: Bash Script for Bedtools Commands (2.5 pts)
Your script correctly implements the necessary `bedtools` commands for sorting, merging, and subtracting the feature files. You followed the exp…
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Hi,
I have a question about the background assumptions of BA3-SNPs. I couldn't find anything in the documentation to answer my question but apologies if it is there and I just missed it. Or perhap…
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## Part 1: Bash Script for Bedtools Commands (2.5 pts)
Your script correctly implements the necessary `bedtools` commands for sorting, merging, and subtracting the various feature files. You used `be…
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# Description of problem
Several build failures have occured when I tried the procedures in [Kata Containers with AMD SEV-SNP VMs](https://github.com/kata-containers/kata-containers/blob/main/docs/…
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The whole "enclave" sub-section can in fact go once the SNP and virtual builds are unified.
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**Describe the bug**
I have a cram file with amplicon sequencing reads, and a cram file with its corresponding "haplotypes". I work with a diploid, so that means I have at most two haplotypes p…
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## Part 1: Bash Script for Bedtools Commands (2.5 pts)
The bash commands in your README file are correct. But put these in their own `.sh` bash script next time, as the rubric asked for.
Score: 2.…
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Hi there!
Thank you for the practical package. I have a question regarding the coloc.abf function when running it between my eQTL and GWAS data, both derived from the same samples. Here’s the code …
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Hey guys,
I am struggling to find some good illustrations to:
`short reads`
`long reads`
`CNV`
`STR`
`SV`
`SNPs`
`indels`
Thank you very much for your amazing work!!
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"a or b too big, or MAXIT too small in betacf: Numerical result out of range"
Looks like a place where there just needs to be some exception handling.