zhou-lab biscuit issues

zhou-lab / biscuit

BISulfite-seq CUI Toolkit

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issues

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paired end reads overlap

#48 hmyh1202 opened 2 years ago
1
[Issue] pileup "feature"

#47 vpbrendel opened 2 years ago
4
[Issue] wrong tsv output produced by pileup.c

#46 vpbrendel opened 2 years ago
0
Conversion Rate calculation

#45 Irfanwustl closed 2 years ago
2
Weird rectangle output

#44 weishwu opened 3 years ago
0
CpG Methylation Calculation from bam file

#43 Irfanwustl opened 3 years ago
0
one read has different CIGAR and read length

#42 alexyfyf opened 3 years ago
0
Compilation problem: Fail to create biscuit binary

#41 PanZiwei opened 4 years ago
0
How is downstream analysis impacted for non-directional bisulfite-sequencing libraries aligned in non-directional mode with biscuit?

#40 meb326 opened 4 years ago
0
Is biscuit used for methylation calling only?

#39 AndyWangSFU opened 4 years ago
0
Updates to BISCUIT

#38 jamorrison closed 4 years ago
0
Position of all cytosines in retention pattern

#37 shahmj opened 4 years ago
0
make vcf2bed work with multiprocess

#36 efratushava opened 4 years ago
0
Change scripts/QC.sh and add scripts/setup.sh

#35 ekushele closed 4 years ago
1
Get biscuit version into a file

#34 efratushava closed 4 years ago
2
Install biscuit with conda

#33 efratushava closed 4 years ago
0
lib/aln/bntseq.c:36:10: fatal error: encode.h: 没有那个文件或目录

#32 ryomawave closed 4 years ago
1
Precompiled download error

#31 Irfanwustl closed 4 years ago
1
How to prepare for setup_file and files in setup_file?

#30 xflicsu opened 5 years ago
1
Collapse strands at CpGs in vcf2bed

#29 chrisamiller closed 5 years ago
3
Make biscuit markdup readgroup-aware

#28 okartal opened 5 years ago
0
alignment and markdup queries

#27 PoisonAlien opened 5 years ago
4
Header for snp bed file

#26 smcnew opened 5 years ago
2
Dose biscuit can used to calculate the ratio of HCG and GCH in each genome site for human? Can I use "biscuit vcf2bed -k 10 -t hcg/gch"? And what's the meaning of colnom 4?

#25 liuzhe93 closed 5 years ago
7
pileup question/bug?

#24 ml4wc opened 5 years ago
0
Typo in VCF header causing issues with pyVCF parsing

#23 aays closed 6 years ago
1
vcf2bed segmentation fault

#22 ZhenyuZ closed 5 years ago
6
Does the -p option allow an interleaved fastq file as input to biscuit align?

#21 dhspence opened 7 years ago
1
meaning of vcf2bed output

#20 vanhzh opened 7 years ago
2
How can I cite biscuit as a reference in my paper?

#19 lijinbella opened 7 years ago
6
biscuit pileup GT format output as Integer

#18 GreenInnovator opened 7 years ago
1
bam generated with bwa-meth

#17 PoisonAlien opened 7 years ago
3
SNP calling and known genotypes (question + feature suggestion)

#16 jdidion opened 7 years ago
2
limit number samples biscuit

#15 jleluyer opened 7 years ago
0
biscuit asm fixes

#14 ttriche opened 7 years ago
0
biscuit asm fails on generated epiread files

#13 ttriche opened 7 years ago
3
Add vcf2bed option to specify sample column

#12 jdidion opened 7 years ago
0
segfaults & floating point exceptions with -p and/or -c

#11 ttriche closed 7 years ago
1
C&T Counts from biscuit vcf2bed?

#10 timpeters82 opened 7 years ago
2
Another SNP calling error

#9 jdidion opened 7 years ago
2
Segmentation fault when SNP calling

#8 jdidion opened 7 years ago
10
Add parameters to ignore biased read positions

#7 jdidion opened 7 years ago
0
biscuit markdups

#6 will-NYGC opened 7 years ago
4
dockerization

#5 zackramjan closed 5 years ago
0
add Zenodo badge

#4 ttriche closed 8 years ago
0
[fetch_refseq:40] Error, cannot retrieve reference chr1:0-0.

#3 ttriche opened 8 years ago
16
adding "C" (any cytosine) support for vcf2bed

#2 ttriche closed 8 years ago
1
add bin/ subdirectory for clean out-of-box build

#1 ttriche closed 9 years ago
0