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I am revamping my spikesorting workflow to individually sort shanks. I have been able to do all the prerequisite steps, code included below.
When attempting to run Kilosort4, the following tracebac…
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Hello, I get an indexing error that originates from MATLAB when I try to run kilosort3 using spikeinterface with our data. I tested our data with other sorters such as pykilosort, spykingcircus and mo…
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### Describe the issue:
After upgrading to v3.0.1, the filtered signal and prediction are not aligned to each other in time. The problem goes away when downgraded back to v3.0
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1. `gh repo clone spikeinterface/spikeinterface && cd spikeinterface`
2. `uv venv && . .venv/bin/activate && uv pip install -e '.[dev]'`
3. `sphinx-build -b ht…
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I have tried so many installation methods and cannot get Phy to work whatsoever. Any help would be appreciated.
This is what I did for my most recent installation attempt:
1. Downloaded the enviro…
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Hi, I'm trying to plot my own data using the 'plot_timeseries' function in the widgets module, and have it displayed in the web GUI generated by sortingview. However, when I try to call the function a…
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**Submitting author:** @magland (Jeremy Magland)
**Repository:** https://github.com/flatironinstitute/neurosift
**Branch with paper.md** (empty if default branch): paper
**Version:** 0.2.5
**Editor:**…
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**Describe the bug**
Firstly, our lab based snr values are significantly different than the ones (SNR) from sortingview (I think thats where they come from). Secondly, across sorts, there are often m…
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Hello, I get an indexing error that originates from MATLAB when I try to run kilosort3 with our data. I tested our data with other sorters such as pykilosort, spykingcircus and mountainsort5 and they …