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Why trying to load a custom pin file, I am receiving a the error:
"The second column of the PIN file must all be "pp"
However
Steps to reproduce the behavior:
# Download the PIN String fil…
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incorporate the functional enrichment to gene modules (detected via gephi or neo4j) and make the corresponding visual representation
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`memoise` is in `Suggests`, so I take it as optional and try to build `martini` without `memoise`, but the build process failed.
The relevant log is
```
** byte-compile and prepare package for l…
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Hi there!
I am running pandaR through the netZooR library on some expression data I have generated. I used the prior network for motifs to construct my TF_Motif input data and stringDB for PPI inp…
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https://string-db.org/cgi/download?sessionId=bnTKutRFqrJe Huge database, could be data overlap (between INTERACTION DATA/ ACCESSORY DATA and FULL DATABASE DUMPS)
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Hi,
I have seen that many data specific to species are present inside the database (notably in `pathwayDB`, `motif`, `geneInfo`, but also inside files in `data_go`).
Currently no information is a…
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Hi Developers
After seeing your tutorial on Biostars, I wanted to try your package on Plasmodium Falciparum data. However, I am facing issue in converting Uniport IDs to gene symbols. Kindly help
``…
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Please make clear the use of the db tag on fields within structs in the README doc. It is not at all obvious. E.g.
`
type Simple struct {
Email string `db:"Email"`
}`
Is required where the n…
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I am using oncoplot function to generate the oncoplot for my mutation data. I am also adding a bunch of annotations in the figure. The legends for those annotations are going out of the figure and I t…