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**Is your feature request related to a problem? Please describe.**
The existing CSV im- and export of securities do not include all internal meta data. Especially attributes and taxonomy assignments …
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The machine learning classifiers used for taxonomic assignment usually assume that all taxonomies are equally likely (eg. Wang, 2007). That assumption can be relaxed for `q2-feature-classifier`.
To…
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Hello,
I am using kraken2 to assign sedaDNA reads to a custom database (made of mitochondrion and chloroplast genomes).
I had to redo some sequencing and my project quite go running through time w…
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mC assignment not correct
![image](https://user-images.githubusercontent.com/4609956/32439144-abdbede6-c2ed-11e7-8f38-30c9ec6da3ba.png)
European Journal of Taxonomy, EJT
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For the taxonomy filtering script that's the default action right now, `just_taxonomy.py`, the pipeline does its own database search to determine taxonomy by looking at the majority LCA match. If it c…
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### Description of feature
As one of the input database files (silva_species_assignment_v138.1.fa.gz) stores an information about the 16S gene primary accession in GenBank database, I'm looking for t…
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Hello! I'm extremely new to bioinformatics/python/github, so I apologize if this is a super easy fix! Thank you in advance for any help/input.
I am trying assign taxonomy to trnL (plant chloroplas…
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It would be super useful to return the pema main output (otu/asv table) in a 7-level taxonomy format, meaning all taxonomy assignments are as:
```
d__Bacteria; p__Abyssubacteria; c__SURF-5; o__SURF-…
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Hello!
I am processing ITS data with DADA2 (primers ITS1F-ITS2). I am following recommendations from this paper (https://www.sciencedirect.com/science/article/pii/S1754504818302800?via%3Dihub) and fo…
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**Improvement Description**
I thought about the `FeatureData[Taxonomy]` artifact and Daniel's warnings about the quality of the assigned taxonomic labels, which depend on the quality of the placement…