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Hi all,
I am not sure if this is to be expected, I am having trouble running "membrain segment" on my WSL2 setup. When I run the segment command, `membrain segment --tomogram-path test.mrc --ckpt-…
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Just cloned the repo and installation went fine. Now testing
`membrain segment --tomogram-path some_tomo_gram.mrc --ckpt-path MemBrain_seg_v9b.ckpt`
produces this error:
`TypeError: The classmet…
jkh1 updated
11 months ago
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Currently, image data is loaded from the `MRC` format, like this:
```python
with mrcfile.open(IMG_FILE, "r") as mrc:
img = mrc.data
```
and the crYOLO detections from an HDF file from @moon…
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Hi, I'm starting to work with SerialEM data and stumbled upon this great package :)
I wanted to report a problem I encountered: `mdocfile.read('example.mrc.mdoc')` complains about the following:
…
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I'm attempting to run dautoalign4warp, following the teamtomo tutorial using the EMPIAR-10164 data set. One issue that I am having however, is that the alignment is consistently failing at the gaussfi…
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Hey Alister!
Since the highest CUDA version for my workstation GPU is 10.1, the highest stable PyTorch version I could use is 1.8.1. I would appreciate it a lot if you could release an additional p…
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Hi Alister,
I tried Fidder but I could not tune the probability parameter so as to obtain a result as good the one obtained by Goldnet within WARP. Especially when we go for higher tilt images. (Se…
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Hey - would you consider relicensing this repo under BSD-3? Ideally I would prefer it if all of the teamtomo repos had the same license, didn't realise this was different
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Hi Brady,
Would it be possible to add a function to use Relion's .star as an input for molecular nodes?
.star files have XYZ coordinates and Euler angles for a single structure.
Best,
Arthur
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Hi Robert,
Is this one you've seen before? I tried to train a classifier from the GUI
output from napari --info
```
napari: 0.4.16
Platform: macOS-12.5.1-arm64-arm-64bit
System: MacOS 12.5…