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## Description
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dear all;
I have a data coming from an experiment where the tissus seams to have moved
and then I got spots with signal where there is no tissus (see image).
If I want …
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It'd be nice to get _ALL_ data of a particular data type (transcriptomics, proteomics, etc.) regardless of source. Can you add a function to do this? We can also filter by source after the fact.
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Hi,@bmill3r,
I recently read your paper "Reference-free cell type deconvolution of multi-cellular pixel-resolution spatially resolved transcriptomics data" and found it very insightful.
I tried …
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(Meta)-transcriptomics data is stored in European Nucleotide Archive, ENA. However, there is no counts table but only sequences ([example](https://www.ebi.ac.uk/ena/browser/view/SAMEA13929756?show=ana…
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PLEASE If there is a way to correlate transcriptomics and proteomics data this would be extremely fascinating! Thank you!
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We are certain that we will be receiving a new data type. Spatial Transcriptomics ([the specific technique](https://spatialtranscriptomics.com/)) will be carried out by Anna Wilbrey-Clark (Sanger). Th…
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Hi there, thank you very much for the tool!
I wanted to clarify if my understanding of why the EMD is defined with the upper limit of 2k is accurate. Is this due to the physical graph structure f…
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Define minimal data, based on the transcriptomics metadata/ontologies found (see #75 ) for different levels:
- shallow (e.g. disease) - not necessarily transcriptomics specific
- data type specifi…
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### Description of feature
Apparently this is a thing now (e.g. 10x spatial transcriptomics + mixcr, e.g. in [this paper](https://www.sciencedirect.com/science/article/pii/S1074761322000814?via%3Dihu…
grst updated
2 months ago
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Hi there!
I've read about updating this software to handle spatial transcriptomics data and seen the posts suggesting that it would be possible to run this with a spatial dataset, I was wondering …