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PAC_mapper with mapper="reanno" throws error:
```
Error in do.call("rbind", strsplit(nams, "\\d_\\("))[, 2] :
subscript out of bounds
```
tried running a few parts of splt_x list at random b…
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Hello,
I have a modes proposal for the output file format improvements:
### minus strand entries
tRNAscan-SE minus strand predictions in the output file have "tRNA Begin" > "tRNA End". Same g…
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At some point we may want to make a more comprehensive list of barcoding genes and their synonyms (also for use in the sequence ID tool, etc.)
Starting here (with a bit of help from AI):
[edited…
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Hi,
I am a newer in small RNA analysis and I have run the analysis with the pipeline successfully according to your instruction.
But considering the output, I have a doubt about the differentia…
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Recently, I used `tRNAscan-SE v.2.0.12 (Nov 2022)` to estimate my genomes. However, when process this string, I got an trna prediction with several exons:
input contig:
```fasta
>contig1
AGTTACA…
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https://en.wikipedia.org/wiki/Cleavage_and_polyadenylation_specificity_factor
CPSF4 | Cleavage and polyadenylation specificity factor subunit 4 | | mRNA export from nucleus | | Reactome | Hom…
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Here is my command:
prokka Z10248.fasta --prefix Z10248spa --genus spa --usegenus spa
[15:03:34] This is prokka 1.14.6
[15:03:34] Written by Torsten Seemann
[15:03:34] Homepage is https://githu…
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When a variant is mitochondrial , do not return the current predictors tables in the variant-type tab, but instead produce a table with the following predictors:
APOGEE (for protein-coding variants…
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The countfiles produced only contained a set of 55 genes, all of which seem to be tRNA and rRNA genes.
I tried aligning to genome files from GenBank and RefSeq, the results were the same with both al…