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After many single-step process obsoletions this branch is more organized:
mRNA polyadenylation children have now all been rehoused or obsoleted (this will go in the next week or so)
Next ta…
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We would like to add Drosophila melanogaster data to work with Julie Aspden and lab, starting with data from [Extensive translation of small Open Reading Frames](http://dx.doi.org/10.7554/eLife.03528.…
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For input:
1. I have got a GFF file from PlasmoDB. "PlasmoDB-66_PvivaxP01.gff"
2. I converted it to GTF file using agat `agat_convert_sp_gff2gtf.pl --gff ../PlasmoDB-66_PvivaxP01.gff -o PlasmoDB-66_…
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Hi Dr. Shujun,
EDTA is a very good software！
Recently, I also encountered a problem when annotating TE sequences in the IWGSCv1p1A.fa genome with EDTA. The error message is as follows: No SINE res…
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If we want types, (which are be useful) maybe we should all specify
protein, ncRNA…
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## MitoZ version?
3.4
## How did you install MitoZ? (e.g. Docker, Udocker, Singularity, Conda-Pack, Conda, or source code)
Conda
## Did you run a test after your installation, and was the…
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Dear Ian,
I have detected a couple of inconsistencies when using the Chloe web portal. Specifically, when I upload the chloroplast genome of
[Arabidopsis thaliana](https://github.com/ian-small/ch…
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Hi Marcela and fellow contributors,
Thank you for developing such useful tool! I have been trying to assemble mitogenome of a bird species using raw reads with this command:
```python $mitohifi/…
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Multiplexed samples require a .tsv file containing the barcodes and sample names. This is described in the yaml file with the `sample_sheet` parameter, [described in documentation](https://github.com/…
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@goodb has created logical defs for GO terms based on Rhea xrefs and reactants. The reasoner is inferring these two terms are equivalent. We need to investigate this.
ukemi updated
3 years ago