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library(SummarizedExperiment)
library(TCGAbiolinks)
library(dplyr)
query.exp
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One of the planned analyses is to benchmark (or, provide prior expectations for) the immune composition of known cell types.
For example, what is typical TIL proportion & composition in a sample of …
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https://doi.org/10.1101/433763
> Recent advances in deep learning, particularly unsupervised approaches, have shown promise for furthering our biological knowledge through their application to gen…
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New term request Immunohistochemistry abnormal for MLH1, MSH2, MSH6, and/or PMS2 in tumor tissue (IHC) (elthat_110918164403):
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Hello,
Thank you for developing such a useful tool. I have two questions regarding the infercnv heatmap.
1. Can we regenerate the heatmap using new order of cells? I saw this issue was brought u…
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I have a scatter block in a WDL (see below). I had one task that called a subworkflow and it was fine (m2.Mutect2). So I decided to add another task to the scatter block and now I get a parsing erro…
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Hello
I'm use R 3.5.1. I got the GDC data-molecular data-hamornized database(hg38)-Project KIRC-Transcriptome Profiling-Gene Expression Quanlification-HTSeq FPKM UQ-Primary solid tumor and download s…
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The plot has title "Disease vs GTEX tissue bulk gene expression"
![plot](https://user-images.githubusercontent.com/30905520/131741896-b573a900-8d1f-4c4f-aeed-f6c42cee17e5.png)
The API call has the e…
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Hi,
I'm following the steps in your vignette (great work by the way) for my data of about 100 NSCLC patients. With `importRdata` I keep receiving the warning though that `sva` finds too many source…
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### Please link to the GitHub Discussion for this proposed analysis.
https://github.com/AlexsLemonade/OpenScPCA-analysis/discussions/628
### Describe the goals of this analysis module.
The go…