BioinformaticsFMRP TCGAbiolinksGUI issues

BioinformaticsFMRP / TCGAbiolinksGUI

TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/

http://bioinformaticsfmrp.github.io/TCGAbiolinksGUI

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issues

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bug

#62 shaopopper opened 8 months ago
0
TCGAbiolinksGUI crashes immediately upon opening in browser

#61 NotAPoetButACriminal opened 1 year ago
0
Problems with processing raw data for methylation analysis

#60 San-meth opened 3 years ago
0
Export PDF plot

#59 Tommetje007 opened 3 years ago
0
problem in new_tumor_event_after_initial_treatment in XML clinical data

#58 AlirezaShokrollahi opened 4 years ago
5
Error message when creating a heatmap

#57 gaherrgott opened 4 years ago
0
Disconnected from the server when trying to preform DEA analysis

#56 rokrazpotnik opened 4 years ago
1
For preparing data of DNA Methylation

#55 liubitian opened 5 years ago
0
TCGAbiolinksGUI cannot move on when reaching "prepare progress"... ...

#54 chunjiezhixin opened 5 years ago
0
TCGABiolinksGUI always returning "disconnected from server"

#53 maxxu05 opened 5 years ago
0
Warning: Error in if: argument is of length zero

#52 StarXian opened 6 years ago
2
Save New SummeriedExperiment the r didn't respond at all

#51 StarXian opened 6 years ago
2
'names' attribute [7] must be the same length as the vector [5]

#50 StarXian opened 6 years ago
1
Error in manage SummarizedExperiment-can't upload new sample matrix

#49 silverlee3000 opened 6 years ago
1
TCGAbiolinksGUI() crashes on web browser

#48 IaelWM closed 5 years ago
0
WHY isn't there a (subtype CIMP high and low) option when doing methylation analysis?

#47 yinlisssss opened 6 years ago
0
"query" gives error in TCGAbiolinks , while downloading

#46 ghost closed 6 years ago
0
tar: Unrecognized archive format tar: Error exit delayed from previous errors. help me!!!

#45 Yangyuan1988 opened 6 years ago
1
Error message in TCGAbiolinksGUI

#44 ghost opened 6 years ago
2
TCGAbiolinksGUI() crashes on web browser

#43 ghost opened 6 years ago
2
Error in manage SummarizedExperiment

#42 DouDou-Echo opened 6 years ago
2
Cannot select IDAT folder

#41 askw23 opened 6 years ago
2
TCGAbiolinksGUI ELMER visualization fails: ERROR: [on_request_read] connection reset by peer >

#40 yinlisssss opened 6 years ago
20
$<-.data.frame: replacement has 1 row, data has 0”

#39 Yangyuan1988 opened 6 years ago
0
$<-.data.frame: replacement has 1 row, data has 0”

#38 Yangyuan1988 opened 6 years ago
0
Error in $<-.data.frame: replacement has 1 row, data has 0

#37 Yangyuan1988 opened 6 years ago
0
How to change the download directory

#36 ajchenwenjie opened 6 years ago
1
R is outdated, still 3.4.1

#35 sky1ove closed 6 years ago
3
Error in combn when performing Differential Methylation Analysis

#34 JJMilner opened 6 years ago
1
After downloading GDC data, it stops at "prepare progress" without any progress nor error message

#33 sky1ove opened 6 years ago
2
Problem with new version - CRASHES

#32 kokyriakidis opened 6 years ago
3
Can download only Counts files. Cannot download FPKM and FPKM-UQ files

#31 kokyriakidis opened 7 years ago
3
GUI innactivated

#30 rtorrieri opened 7 years ago
1
Using TCGAbiolinksGUI behind proxy server

#29 moko-3 opened 7 years ago
1
how to download expression data file from TCGAbiolinks GUI

#28 varun171 closed 11 months ago
17
"Error in [: subscript out of bounds" when using DEA

#27 fireindark707 closed 7 years ago
2
Could not install the dev version of TCGAbiolinksGUI via github

#26 bububeo closed 7 years ago
2
Data Preparation - SummarizedExperiment object generation not working

#25 alevax closed 7 years ago
9
File type selection works only partially

#24 alevax closed 7 years ago
4
All results of "subtype data search" are the same, no matter what tumor is selected

#23 maxxu05 closed 7 years ago
3
Cannot upload summarized experiment into Transcriptomic Analysis

#22 maxxu05 opened 7 years ago
1
Unable to download molecular data with "clinical data" with category filter"

#21 maxxu05 closed 7 years ago
1
Constant disconnects with GUI with it being very slow and certain features not loading

#20 maxxu05 closed 7 years ago
2
There are random columns within the dataframe that contain row labels. In volumes, data is not saving locally.

#19 maxxu05 closed 7 years ago
5
Still an "Error while preparing files" when downloading as Summarized Experiment

#18 maxxu05 closed 7 years ago
2
"Error while preparing files" when attempting to download GDC Molecular Data as a Summarized Experiment

#17 maxxu05 closed 7 years ago
7
Summary pie charts don't show up in Safari or Google Chrome Browsers

#16 AmyOlex closed 7 years ago
4
Gene Symbols Are Missing From DEA Results

#15 DarioS closed 7 years ago
5
Search Results Summary Lacks Number of Samples

#14 DarioS closed 7 years ago
7
TCGAbiolinksGUI has error when running DEA analysis

#13 AmyOlex closed 7 years ago
12