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PediatricOpenTargets
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OpenPedCan-api
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Update API database using OpenPedCan-analysis v12 final release data
#87
logstar
closed
1 year ago
3
Update API database using OpenPedCan-analysis v12 data release
#86
logstar
closed
1 year ago
0
Add TCGA expanded TPM boxplots
#85
logstar
closed
1 year ago
1
`postgres:11.10` docker image APT repository is removed
#84
logstar
opened
1 year ago
3
Add testing for CNV Evidence plots and tables
#83
kelseykeith
opened
1 year ago
0
Add CNV Evidence Plot plot and table API endpoints
#82
kelseykeith
opened
1 year ago
0
Build CNV Database
#81
kelseykeith
opened
1 year ago
0
Draft initial CNV evidence view plot data wrangling and plotting scripts
#80
kelseykeith
closed
1 year ago
2
Update API database using OpenPedCan-analysis v11 TPM data release
#79
logstar
closed
1 year ago
2
Check API PRD server log and AWS monitoring stats
#78
logstar
opened
1 year ago
1
Update Dockerfile to start from rocker/tidyverse instead of installin…
#77
brianghig
closed
1 year ago
5
Update API database using OpenPedCan-analysis v11 data release
#76
logstar
closed
1 year ago
3
Automate API endpoint development for new plots and tables
#75
logstar
opened
2 years ago
0
Develop CNV Visualizations plots and tables API endpoints
#74
afarrel
opened
2 years ago
2
Add TCGA RNA-seq samples to TPM boxplots
#72
logstar
closed
1 year ago
0
Design and develop individual sample gene expression heatmaps
#71
logstar
opened
2 years ago
0
Develop DNA methylation plot and table API endpoints
#70
logstar
opened
2 years ago
0
Build DNA methylation database schema and tables
#69
logstar
opened
2 years ago
1
API PRD instance load balancing and scaling rules
#68
logstar
closed
2 years ago
2
API request logs to capture usage/scale needs
#67
chinwallaa
closed
2 years ago
3
Update production instance to v0.4.0-beta
#66
logstar
closed
2 years ago
1
Update differential gene expression database table using v10 results
#65
logstar
closed
1 year ago
1
Update differential gene expression database table using v10 results
#64
logstar
closed
1 year ago
4
Add TPM boxplots to the sides of differential gene expression heatmaps
#63
logstar
closed
1 year ago
0
Change differential gene expression heatmap texts
#62
logstar
closed
1 year ago
7
Add boxplots to the sides of differential gene expression heatmaps
#61
logstar
closed
1 year ago
4
Add differential gene expression plot and table endpoints
#60
logstar
closed
1 year ago
1
Build bulk differential gene expression database tables
#59
logstar
closed
1 year ago
1
Move boxplot color legend to left side
#58
logstar
closed
2 years ago
0
Left align boxplot titles
#57
logstar
closed
2 years ago
0
Change boxplot titles to describe primary/relapse of included tumor samples
#56
logstar
closed
2 years ago
0
Profile and optimize OpenPedCan-api API server performance
#55
logstar
opened
2 years ago
0
Change boxplot box fill colors to be color blind friendly
#54
logstar
closed
2 years ago
7
Add relapse tumors samples to `/tpm/*` endpoint tables and plots
#53
logstar
closed
2 years ago
4
📫Add all-cancer and all-GTEx-tissue plot and summary table endpoints
#52
logstar
closed
2 years ago
3
Update TPM boxplots to show relapse tumors side-by-side with primary tumors
#51
logstar
closed
2 years ago
9
Add "pediatric" in tumor TPM boxplot titles
#50
logstar
closed
2 years ago
1
Design and build an API endpoint to check database metadata
#49
logstar
opened
2 years ago
0
Design and build a database metadata schema to track database version, stats, etc
#48
logstar
opened
2 years ago
0
🗃Update database source data to OpenPedCan-analysis v10 release
#47
logstar
closed
2 years ago
2
Update database source data to OpenPedCan-analysis v10 release
#46
logstar
closed
2 years ago
1
Improve readability of boxplots that have too many boxes
#45
logstar
closed
2 years ago
3
Design and implement new endpoints for all-cancer and all-GTEx tissue bulk RNA-seq expression
#44
logstar
closed
2 years ago
0
Set up OpenPedCan-api production site
#43
logstar
closed
2 years ago
1
🖼 Change `tpm/gene-disease-gtex` boxplot title
#42
logstar
closed
2 years ago
3
Design and implement QA/PRD RDS data update workflow
#41
logstar
closed
2 years ago
1
Change `gene-disease-gtex` boxplot title
#40
logstar
closed
2 years ago
0
Create QA database RDS instance
#39
logstar
closed
2 years ago
1
Investigate and fix CSV format incompatibilities between `readr::write_csv` and PostgreSQL `COPY FROM`
#38
logstar
opened
2 years ago
0
Add DESeq differential gene expression table and plot Endpoints
#37
afarrel
closed
1 year ago
4
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