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http://itol.embl.de/help.cgi is an awesome website to plot tree with metadata.
I m trying to export phyloseq object to a file which can be read by ITOL.
What's the best way ? Is there any way to…
dridk updated
7 years ago
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This test is described and motivated here
### Test
If ePub readers cannot support getting the current pagination number of a passage, as it would appear in a book or journal article (e.g., PDF) av…
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Hello,
I am new in this field. I am writing to enquire about a problem that I got while I was following each step of workflow and I am stuck in the step of constructing NJ-tree:
treeNJ
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Also, could we replace this inelegant programming which is wasteful in space:
plyr::ddply(prevdf, "Phylum", function(df1){mean(df1$Prevalence)})
plyr::ddply(prevdf, "Phylum", function(df1){sum(df1$Pre…
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## Summary
OSSU should undertake a search for a number of new courses in statistics.
## Background
OSSU currently recommends 2 courses on statistics:
- [Intro to Descriptive Statistics](https://ww…
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Hi,
Thanks for the for program it's been great so far. I want to find out which OTU/ASVs are responsible for the patterns I see in my NMDS plots. For example if I see that species A clusters diff…
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For the vignettes it seems the package webshot is needed.
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I have got the following Error messages:
```
> ddF
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This year in March, I started a PhD under the supervision of A/Prof Alice Motion and Dr Reyne Pullen. My PhD project focuses on how we can use non-academic spaces to engage young adults in chemistry a…
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Hi,
could you please advise, should I rarefy data for plotting beta diversity? I read that for alpha diversity is it not needed.