-
Hi ! where can I find gtex.db ?
thanks
-
Module 4 VEP annotation from Esembl
gl186 updated
9 months ago
-
Create a docker container for VariantGrid for easier onboarding for new devs or people wishing to test the product.
Here is a docker settings file that Andrew Patto setup, note at this point it doesn…
-
Hello,
I was able to install megSAP on our server and after a successful test run with provided panel data I am trying to run analysis of WES data. Everything runs smoothly until the VCFAnnotatefromV…
-
It seems a good idea to use VEP docker image.
see : https://www.ensembl.org/info/docs/tools/vep/script/vep_download.html#docker
-
I am getting the following error from the gtf library when trying to annotate my vcf with stringtie output.
```
$ vcf-expression-annotator -o /shared_dir/temp.annotated.vcf -s sample /shared_dir/tem…
-
Hey
I run command and get some info about missing "clinvar_clnsig" column":
`python3 tapes.py sort -i test.VEP.vcf -o vepout.txt --tab`
***TAPES: SORT***
> 2021-07-14 10:28…
-
Use ensemble-vep to predict effect of each variant in a loom file. Given a loom file, extract the variant sites to use as input to VEP.
Document with additional directions for downloading VEP resourc…
-
I `git cloned` the Github repository on my HPC but when I tried to do the following installation:
**Command:**
```
devtools::install_github("aschluter/ClinPrior")
```
**Error:**
```
Dow…
yr542 updated
1 month ago
-
Hello, I am very interested in your work. I encountered some problems during the experiment:
Question 1. Ask ‘diffusion_conf.json’、‘Distillation_coof.json’ and ‘sapmling_conf.json’ under the ‘diffu…