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We need a list of BCOs that can fulfill two main functions:
- [ ] Exemplar BCOs referenced in publications
- [ ] BCOs that have important features for testing to be included in the example DB
@t…
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When I run "nextflow pull EBI-Metagenomics/emg-viral-pipeline"
I get error :
Checking EBI-Metagenomics/emg-viral-pipeline ...
Project config file is malformed -- Cause: Compile failed for so…
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There are two common ways to sequence a DNA: short-read and long-read sequencing. As of right now, YEAT only supports short-read sequencing. Adding long-read assembly support will be a tremendous addi…
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We are close to releasing our new pipeline schema which describe input parameters. Through chatting to people at BOSC 🍐 I've become aware of a project called [Bioschemas](https://bioschemas.org) which…
ewels updated
3 years ago
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### Ask away!
Hi all,
We are working with Minimap2 within the EPI2me lab platform and trying to build a custom database based on the 1,500 full-length 16S rRNA sequences present in the [HOMD](https:…
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I am trying to find the best way to identify overlapping genes in my complete viruses extracted from metagenomes. I tried genotate hoping that it would identify them contrary to prodigal-gv and phanot…
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Hi! I am trying to run the pipeline for 12 samples, with the following parameters:
`nextflow run EBI-Metagenomics/emg-viral-pipeline --fasta "./contigs_rnaSpades/*.fasta" --cores 8 -profile local,d…
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Many thanks for your job! I have almost 12T data that needs to be clustered by the Markov Cluster algorithm, do you have any suggestion?
[mclIO full] reading
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I'm trying to build the database for my metagenomics analysis, and I've run the following commands but the database is taking too much disk space (bacteria was already 35gb and only 19% was downloaded…
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Hi!
I am trying to run VIRify in an HPC cluster using nextflow (22.10.4.5836), slurm and singularity (3.4.2).
This is the command in my sbatch script
`nextflow run /CCAS/home/cpavloudi/.nextf…