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1. [Integrating ChIP-seq with other functional genomics data](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5888983/pdf/ely002.pdf)
2. [2014-nature review-Identifying and mitigating bias in next-gener…
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Clair3 does not call 16 bp at each end of a reference sequence (https://github.com/HKU-BAL/Clair3/issues/257)
Supplement Clair3 calls with Bcftools mpileup/call?
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The vocabularies for phenotypes should be listed in the [wiki](https://github.com/OHDSI/Covid-19/wiki/Vocabulary-for-phenotypes)
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Hi @edwintse @TomkUCL @lindapatio @jemimahaque
We need more about the project on the wiki - describing the story so far.
https://github.com/StructuralGenomicsConsortium/CNP4-Nsp13-C-terminus-B/…
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Title: Cyclosporin A inhibits the replication of diverse coronaviruses
## Please paste a link to the paper or a citation here:
Link: https://doi.org/10.1099/vir.0.034983-0
## What is the …
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Leaf diseases in vineyards are fungal, bacterial, or viral infections that affect the leaves of grapevines. These diseases can have a significant impact on vineyards and are of great importance to bot…
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**Version info**
- bcbio version (`bcbio_nextgen.py --version`):
```
$ bcbio_nextgen.py --version
1.2.9
```
- OS name and version (`lsb_release -ds`):
```
$ lsb_release -ds
"CentOS Linux rele…
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kraken2-build --threads 24 --download-library bacteria --db K2_ABPVFP_CG_3_22 &
rsync_from_ncbi.pl: unexpected FTP path (new server?) for https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/128/725/GC…
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### Ask away!
I am running the wf-amplicon on PCR amplicons covering a complete virus genome (4 overlapping long amplicons per sample, pooled in one barcode) and map the reads to a reference genome o…
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Hi!
I am trying to incorporate bcbio-vc docker image onto my pipeline manager and for that I am trying to run and test variant calling on `bcbio-vc` docker image but I see that `bcbio_nextgen.py` i…