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Hello,
Thank you for providing the script for the visualization of the heatmap of a WSI.
Following this, [https://github.com/mahmoodlab/CLAM#Heatmap-Visualization], I got the error as mentioned …
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I tried to calculate FROC using your resnet18_base.ckpt, and I got:
**Avg FP = 0.25
Sensitivity = 0.6061946902654868
Avg FP = 0.5
Sensitivity = 0.6769911504424779
Avg FP = 1
Sensitivity …
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Hi there,
Thanks for sharing this interesting work to the community. Regarding the training data formatted in your configs, can you provide some details about what the csv and foremask are used fo…
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## 🐛 Bug
When calling `viewer.add_image` with a zarr pyramid, various `rotate` values result in the following:
| `rotate` in degs | Result |
| ----- | ----- |
| `0` | normal |
| `(0, 54.2]` |…
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First, thank you for this wonderful work.
I just have a very naive question (as a beginner of python),
I followed your tutorial and everything goes well.
the issue I noticed is the output images …
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I got error when iter Dataloader like following:
`
Traceback (most recent call last):
File "D:\PyCharm\helpers\pydev\pydevd.py", line 1664, in
main()
File "D:\PyCharm\helpers\pydev\pyd…
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**Issue:**
At present Pillar 2 samples are sequenced in a number of locations within the UK including Wellcome Sanger, Public Health Wales and in Northern Ireland (by HSCI/Belfast Trust/Queens).
…
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Really cool project!
I had a quick question that I suspect you know the answer to.
If I know exactly the detection I want to access, is there a way to get to it?
```
>>> type(qpitem.hierarc…
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Hi all,
I have tried to run the Pytorch version after I initially tried with the Tensorflow version. I tried to run the inference script in wsi mode with a ndpi image. It start correct but mid-way…
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Hi Marvin,
I wanted to know how you calculated the normalization_channels_mean and std. Also, I will be grateful if you can tell me the steps or hints to get the tumor maps for WSIs as yours. I am …
riznk updated
3 years ago