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Hello.
I can't run runMe.sh for version 3.0.0, 2.1.0, 2.0.0
I give error:
# ./runMe.sh
- extracting ORFs from transcripts.
-total transcripts to examine: 921
[900/921] = 97.72% done
######
### …
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I "pip3 install mikado" installed the mikado on our hpc cluster and used the "sample_data" to test it from command line. I got same error as "https://github.com/EI-CoreBioinformatics/mikado/issues/164…
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Hi,
Any plans to have a docker version of the PASA pipeline, that would easy a lot the installation of dependencies.
Thanks in advance,
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Hi,
Thank you very much for developing such a useful piece of software. I'm running the latest version of Mikado (2) and I'm encountering a parsing problem with an XML diamond BLAST file. I'm runni…
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Hey there,
I've stumbled onto another error message, and I don't see any other issues reporting this same error. When I run PASA with --TRANSDECODER I get a lot of the following error:
Use of un…
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**Are you using the latest release?**
Yes, using 1.5.2
**Describe the bug**
I am inputting PASA output via --pasa_gff, and getting an error.
**What command did you issue?**
funannotate predic…
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Hi,
I tried to run the `daijin assemble`
```
daijin assemble -nd -C 20 -nd daijin.yaml
```
And then I got this error:
```
KeyError in line 40 of /home/raymond/devel/python/thirdparty/anac…
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Is it possible to get annotations for proteomics data? I loaded and ran trinotate with my blastp output file but ended up with an empty results/report file with only the headers. I obviously don't hav…
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Hello @lucventurini ,
I have moved onto mikado serialise and have ran into another error. I was wondering if I could get your help?
Below is the error that I am currently getting.
```
2019-0…
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When running dammit in the eel pond protocol (https://github.com/dib-lab/eel-pond/blob/master/5-annotating.rst), I received the following error message:
`(dammit) ubuntu@ip:~$ dammit databases --in…