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Dear LIRICAL team,
I have tried to input HPO + VCF in both yaml and Phenopacket form, in which the vcf file is the Pfeiffer.vcf from exomiser, and I also tried both LIRICAL.jar-1.3.4 and LIRICAL-1.3…
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Consider using Plotly.
Also, whatever bar chart Vincent is using for the Histo-Pheno here:
https://monarch-ui-new.monarchinitiative.org/disease/MONDO:0007947#histo-pheno
The KGHub dashboard is …
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We should roll this out in stages.
- [ ] Step 1. Link out using existing identifiers. (see #40)
HPO-Web curie | Monarch curie | Monarch URL example
------|--------|---------
````ORPHA:```` | …
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We have an OBO Academy YouTube. Could post other Monarch videos, such as tutorials.
Can we make a Monarch playlist that includes the NIH video?
(BTW, I wasn't sure which repo to put this in, please…
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> GO BP and MF are shown in figure 3 as ingest sources, but I did not find these ( I only found component under "anatomy" are there plans to include these 2 aspects?
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@pnrobinson wrote (in Slack):
Looking at the new Monarch app there is a lot to like but there are still medical errors that are related to ORPHA weirdness. For instance, the assertion that FBN1 is …
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org.monarchinitiative.phenol.base.PhenolRuntimeException: Error loading JSON
at org.monarchinitiative.phenol.io.OntologyLoader.loadGraphDocument(OntologyLoader.java:94)
at org.monarchinitiative.ph…
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We have HPO's g2d file sitting in our data-cache now (thanks @iimpulse!) and we can swap it in for our OMIM g2d ingest
The file looks like (taken from a few places to get examples of all 3 associa…
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[https://ui.transltr.io/results?l=Primary Cutaneous T-cell Non-hodgkin Lymphoma&t=0&q=c3e50c7b-8b9b-42bc-a66c-efe02f9c985a](https://ui.transltr.io/results?l=Primary%20Cutaneous%20T-cell%20Non-hodgkin%…
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## Type: Bug Report
## URL: http://transltr-bma-ui-dev.ncats.io/results?loading=true
## ARS PK: 1ca9a69d-6a22-48ca-a994-3df25bb0cf56
## Steps to reproduce:
search for Addison Disease, click on Z…