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I can't get `prepare_ceres_inputs` to work consistently with my proxy settings and, on the rare occasion I do, I can't get it to work with my bowtie and samtools:
```
> prepare_ceres_inputs(inputs_d…
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Thank you for developing this tool, I had been looking forward to using it!
For a metagenomic sample I'm analyzing, I have a strong suspicion that a certain plasmid should be binned with a certain …
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I want to build a kraken database:
kraken2-build --standard --threads 24 --db krakendb
This line seems to work until this step:
Step1/2: performing rsync file transfer of requested files
T…
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Dear Pling developers,
I write to ask if it is possible to save the plasmid network generated as an SVG image or if there is a way or a tool to enable saving the networks as a static image.
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# Structure:
## Introduction
### Statement of the purpose
### Significance of the study
### Scope of the study
### Review of related literature
## Methods
## Results
## Discussion
#…
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Hello,
I am installing Kraken2 for the first time, and when I try to install the standard database I get below error. Is there anything that I can change so I would be able to install the database…
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# Bioconda
- [x] Create a `bcalm` recipe for Bioconda @natir
# Flowcraft
- [x] Create an `abyss` component @emreerhan https://github.com/assemblerflow/flowcraft/pull/146
- [x] Create a `bcal…
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Hi,
I have just installed homopolish and was trying to run it on assemblies of a set of _Polaromonas_ isolates, but I keep getting the 'less than 5 closely-related genomes' error message and I don't…
Dwrgi updated
2 years ago
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### Description of feature
Hello,
Would it be possible for you to add the ```--CX``` option from the ```bismark_methylation_extractor``` script as you were able to add the ```--comprehensive opt…
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Hi there!
We used Jellyfish and GenomeScope on pair-end NGS data to perform k-mer analysis on a new sequenced species of unknown genome size and unknown ploidy nature.
When I've run Genomescope…