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Dear author,
Is it possible to get softmasked genome instead of the hardmasked default? Sometimes softmasking is required or recommended as input by other annotator (other than Maker) or mapping pr…
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Dear developer,
**What do you want to know?**
When will the RepeatMasker or famdb.py update for the latest version of Dfam?
**Helpful context**
I found that Dfam has just updated the Dfam.h5 v…
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when i run maker， i get this question , how to solve this trouble？
maker version 3.01.03
RepeatMasker version 4.1.2-p1
python version 3.6.10
Species "all" is not known to RepeatMasker. There …
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Hi shujun,
I have met the following error when I ran LTR_retriver. The species has two version of the genome, I used one of them. I do not know how to resolve it.
cp: cannot stat ‘./sample.ssrmask…
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Hi,
I am impressed by this amazing tool, and I followed the installation instructions as follows:
```
git clone https://github.com/WGLab/DeepMod2.git
conda env create -f DeepMod2/environment.yml…
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Dear @oushujun,
I am using EDTA v2.0.1 to annotate TEs/repeats in highly fragmented de novo genome assemblies (50K - 100K scaffolds/assembly). I am annotating several assemblies using the divide-an…
bvs updated
10 months ago
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I would like to ask if I want to obtain the genome sequence with only LTR regions masked and using soft-masking, should I follow the steps below? The main question is whether I should use EDTA.pl af…
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Hello,
I am having trouble running the LTRstruct pipeline with the (latest) docker image, I received the following error:
`Dependency checking: Error: The RMblast engine is not installed in Repeat…
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When using HiTE, I encountered KeyError using different genomes. Hope to get your answer.
Script：
#!/bin/bash
source ~/anaconda3/bin/activate HiTE
python /work/home/qljgroup02/01.chinese/01.wg/s…
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Hi, I am trying to install the most current version of RepeatMasker (4.1.2-p1) and am encountering the following error during configuration:
Enter Selection: 5
Building FASTA version of RepeatMask…