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WGLab
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DeepMod2
DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
MIT License
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No module named 'tensorflow.keras'
#30
taha1750
opened
3 weeks ago
0
Error！Deepmod2 analysis of human methylation
#29
zzangcy
opened
4 weeks ago
2
About the compatiblity of Dorado basecalling model
#28
gxAlan233
opened
1 month ago
1
some output files are missing
#27
sachingadakh
closed
1 month ago
7
Training data from HG002, HG003 and HG004
#26
aCoalBall
closed
2 months ago
1
About guppy model
#25
HW-Superior
opened
4 months ago
3
--model 'transformer_r10.4.1_5khz_v4.3' has error "UnboundLocalError: local variable 'model' referenced before assignment "
#24
kerenzhou062
opened
4 months ago
1
not running
#23
Jeff-Field
opened
5 months ago
4
TypeError: unsupported operand type(s) for +: 'int' and 'list'
#22
qtran1
closed
5 months ago
3
Unable to see GPU utilization when running deepmod2 detect
#21
rjmat97
closed
6 months ago
1
Can DeepMog2 run with 260bps models ?
#20
damienhinsinger
closed
6 months ago
1
Example: ValueError: failure when retrieving sequence on 'chr1'
#19
hewei-nju
closed
7 months ago
1
ModuleNotFoundError: No module named 'torch'
#18
HLHsieh
closed
6 months ago
7
local variable 'non_primary_reads' referenced before assignment
#17
Modernism-01
closed
8 months ago
2
Failed running deepmod2 detect and not found model
#16
Modernism-01
closed
9 months ago
3
Does Deepmod2 have a 6mA detection model now?
#15
Domi-Z
closed
7 months ago
1
example deepmod2 output result file?
#14
lidaof
closed
7 months ago
2
Error with BAM file on Command 3
#13
anish-taori
opened
1 year ago
1
detect unknown modifications
#12
gerbenm
opened
1 year ago
1
Unable to visualzie DeepMod2 results in IGV
#11
kafker
closed
8 months ago
2
TypeError: 'NoneType' object is not subscriptable
#10
Arkadiy-Garber
opened
1 year ago
2
Encountering errors with BAM file
#9
sagnikbanerjee15
closed
7 months ago
28
The consistency of 5mC methylation generated by DeepMod and DeepMod2
#8
qiuyixmm
opened
1 year ago
0
The basecalling and alignment can be performed separately?
#7
qiuyixmm
closed
1 year ago
2
methylation calling in non-CpG context (CHG and CHH)
#6
yusmiatiliau
opened
1 year ago
8
KeyError: 'segmentation' after running detect-guppy
#5
HippoYI
closed
7 months ago
9
Please refer to DeepMod2 for the updated tool.
#4
fire-activate
closed
7 months ago
1
TypeError: 'NoneType' object is not subscriptable
#3
fire-activate
closed
7 months ago
1
Why doesn't Deepmod2 have a 6mA detection model, will it be developed subsequently?
#2
fire-activate
closed
7 months ago
4
Create LICENSE
#1
umahsn
closed
2 years ago
0