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Trying to use Philosopher (within FragPipe) to analyse pepXML files, but keep getting this error. 'FATA[12:10:57] Missing input parameters. missing pepXML files'. But I have checked the directory in w…
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![Provision](https://user-images.githubusercontent.com/80298417/112396288-da162200-8ccd-11eb-8b0f-ff28358bab51.PNG)
![s](https://user-images.githubusercontent.com/80298417/112396356-f74af080-8ccd-11e…
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is it possible to quantify 2 experimental groups ran in triplicates, 8 fractions each on searchGUI?
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Dear Developers,
I'm testing Ionquant within Fragpipe (v14.0) and want to use match between runs. After reading the documentation and the preprint (Label-free quantification with FDR-controlled mat…
algom updated
3 years ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/svalvaro/MQmetrics
Confirm the following by editi…
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Hi
I ran MSFragger LFQ MBR script and i have different form of intensity which one correspond to normalize LFQ. I see same values in all three forms of intensity (total, unique and razor). My LFQ-M…
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**Describe the bug**
Running the example described in the README with the provided example data fails.
**To Reproduce**
Steps to reproduce the behavior:
1. Loaded the IceR with `library(IceR)`
…
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Apollo crashes while trying to deserialize a failed query from cache, if the response contains a null object.
The flow goes as follows:
- Client performs a query which returns errors and `data.…
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Dear Developers,
Finally I run my fragpipe-workflow (LFQ-MBR) completely from a script (that was developed with a smaller DB and it run successfully).
Using now my large MetaproteomicsDB I end u…
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