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First of all, thank you so much for this amazing article and r package.
I would like to apply it to my own dataset, but I have a question in mind.
I see in the used example that exposure (fire i…
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Hello,
So I am running some data sampled from respiratory tract to explore the microbiome. So far, all samples run smoothly with runtime ranging from 10-45 minutes using my current AWS instance (32…
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Post you questions here before Thursday's meeting:
- [x] Neeraj
- [ ] Adesh
- [x] Amit
- [x] Simon
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Here's a list of recent papers we need to be mindful of...
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It would be cool to be able have a function to produce tables like this from `taxmap` objects for use in Rmarkdown documents and publications:
![image](https://user-images.githubusercontent.com/609…
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I would like to use variations of CLR transformation.
e.g., non-zero or iqlr CLR, both using only a subset of the features to estimate the geometric mean.
I can transform a phyloseq object befor…
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I would like us to collectively consider and decide on the term we want to use for the concept we currently describe as "Factor". I think there are better terms we could use that align with the commun…
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New Funding Opportunity: Pilot Projects Enhancing Utility and Usage of Common Fund Data Sets!
The NIH Common Fund supports transformative research programs that generate new technologies, methods,…
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Hi Ben,
I was trying to install dirseq but got the following error,
Here is the command:
gem install dirseq
Error: /anaconda3/envs/dirseq/bin/ruby: error while loading shared libraries: libjema…
uqmwu updated
2 years ago
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Dear Penn State Microbiome Center DAWG:
Just finished a DADA2 analysis of fungal reads using the app on Galaxy (probably should have done it via R but thought I could help Galaxy trouble shoot its …
hwfes updated
4 years ago