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I miss the ionization mode in the parquet format.
Did you consider not storing the intensities and masses as arrays but exploding them?
I find the data much easier to analyse if the data is in long…
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I followed the [this page](https://pyopenms.readthedocs.io/en/latest/build_from_source.html) to build pyopenms from source on Apple M2 chip. It shows build successfully.
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When I try it with my mzML converted file (I've tried peak picking and a collision energy subset, since the…
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Would be important to have for major software tools an example of a crosslinking dataset (would be good if is biologically relevant) in the crosslinking resource. One option could be to look for submi…
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For classical use cases. Review and update https://github.com/OpenMS/pyopenms-docs/pull/265/files
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I'm trying to pull the OpenMS docker container for version 2.7 as per the command
`docker pull ghcr.io/openms/openms-library:2.7.0` in the documentation but it seems that this does not exist.
Re…
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https://abibuilder.cs.uni-tuebingen.de/archive/openms/
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Rules like [this for raxml](https://github.com/galaxyproject/tpv-shared-database/blob/957d87883dde0c32f155da7634fb518b695a8866/tools.yml#L2277) allocate additional cores but because most people set `m…
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### Description of the bug
https://github.com/bigbio/quantms/pull/222
### Command used and terminal output
_No response_
### Relevant files
_No response_
### System information
_No response_
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### Is there an existing module for this?
- [X] I have searched for the existing module
### Is there an open PR for this?
- [X] I have searched for existing PRs
### Is there an open issue for this…