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Not all are directly relevant, this has become somewhat of a reading list for myself.
- [ ] Sequence Alignment/Map Format Specification
- [ ] The Sequence Alignment/Map format and SAMtools
- [ ] Trim…
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If I search for the GO term "axon" I get results from every species except for rat which makes me assume that the GO annotations used for searching do not include any annotations for rat. Is that the…
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Based on their text definitions, these should be merged, as the top
def is subsumed by the bottom one:
~~ is_a GO:0040023 ! establishment of nucleus localization [DEF: "The directed movement of the n…
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the report page assumes that the gene you're looking at is for the mine's default organism. if a mine contains more than one organism, all non-default organism genes will have problems. need to get th…
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Please how do i run the command wgs2ncbi
do i need to install it?
if i run wgs2ncbi it returns command not found @rvosa
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* String mapping: http://string-db.org/mapping_files/uniprot_mappings/
* [x] in docker file, download all dictionaries (for loop)
* [x] most_common_organisms = ... python dict
~~* [ ] lazy eval…
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iCount genome mus_musculus -r 80 --chromosomes 21 MT
Executing the following command: iCount genome mus_musculus -r 80 --chromosomes 21 MT
Input parameters for function 'genome' in iCount.genomes.en…
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I used the following commands to run bismark:
/PUBLIC/software/RNA/bismark/bismark_v0.12.5/bismark -u 50000 -q --bowtie2 -p 4 --prefix map --path_to_bowtie /PUBLIC/software/RNA/bowtie2-2.2.5 -o map_t…
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https://github.com/juanmirocks/STRING-tagger-server
* [x] tag types: `-22, 9606` and set `autodetect=True`
* [x] Test with other organisms and make sure that they do not produce 9606 (human)
* [x…
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Results tables allow users to create lists with trailing spaces in name. Chomp chomp.