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Hello,
I tried the tool following the tutorial, but applying it to MEG, instead of EEG (of course modifying a few details). I liked the individual microstates that I computed, after selecting my "m…
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I've observed that chip1 peaks and chip2 peaks can overlap a little bit at the edges. We've discussed how that comes from the windowing approach, but would it be possible to add a post-processing step…
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- Fragsize plots inside/outside peaks
- Pearson correlations between replicates along sliding window & within peaks
- Rmd report summarizing outputs
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Hi,
-d median distance between peaks cutoff. This should be the length of your shortest
input sequence in your library preparation. Defaults to 500
I have a question about -d parameter. …
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Hi,
I am running into an error when using the getCounts function:
fragment_counts
jf292 updated
2 years ago
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**Describe the outcome that is desired.**
When using `PDCalibration` with peak windows, implement a test to make sure the windows are being sorted along with the peak centers.
**Describe any sol…
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If we remove bad peaks from our experimental spectra, then there are fewer peaks that have to be compared to each theoretical. This improves both our confidence as well as our search speed.
Here are…
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**Use case**
I'm using the hmmratac implementation within MACS3 but it does not output narrowPeak.
**Describe the problem**
I'm using the hmmratac implementation within MACS3 but it does not outp…
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For some reason I can trigger horrendous packet loss on my local network simply by uploading a file to Google Drive. When I do this, I get latency spikes as high as 500-1000ms, whereas previously ever…
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based on discussion with C today, I'm going to shift away from embedding SELEX-seq probes and towards embedding shorter windows of ATAC-seq peaks.
To that end, I need to do several things for the d…