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I am running openMS 2.5.0 installed through KNIME. I am attempting to run an LFQ pipeline with MGFPlusAdapter as search engine and FeatureFinderCentroided to detect features. I am getting the followi…
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Dear IonQuant developers,
From the Readme file and old publications I read that MSFragger is capable of handling labeled samples (Silac, dimethyl) by adding variable modifications to the search par…
algom updated
3 years ago
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Dear Developers,
While I can now run the complete LFQ-pipeline with FragPipeGUI - I would like to run it from a script when invoking my huge-MetaproteomicsDB.
Using the log-file from FragPipe (o…
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@oriol we have an issue with a CII instance that uses multiples `ram:TaxTotalAmount` elements for different currencies:
```xml
10781.25
0
…
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I used FragPipe 13 to analyze two mzML files and wanted to try LFQ functions, and the error happened.
The log file is attached.
[log_2020-07-02_19-46-48.txt](https://github.com/Nesvilab/FragPipe/f…
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When I am running Philosopher (version 3.4.13) on a set of TMT10-MS3 samples, I am reaching the "label-free quantification step" and experiencing the following error message:
```
...
time="10:23:…
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Switch from PAN mode to SENDS mode,
then Shift+Master produce a crash :
```
Index 0 out of bounds for length 0
java.lang.IndexOutOfBoundsException: Index 0 out of bounds for length 0
at jav…
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Please see my attached file.
I am running the LFQ-MBR function but didn't get the result table.
It shows "Processing interrupted, stopping PhilosopherReport"
Thanks
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Fatal error during timsTOF ddaPASEF data analysis. I receive this error when attempting to use the MSFragger 3.0/FragPipe 13 combination for timsTOF data analysis and spectral library generation (Easy…
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Hi,
I'm getting the error below while compiling 1.2.0 on all Fedora releases. Can you please take a look? I can build packages fine on RHEL 7 and 8.
FWIW, Fedora 31 uses gcc 9.3, and Fedora 32…