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# Current versions and available ones
## Major
- [x] RepeatModeller 1.0.11-> [2.0.3](https://bioconda.github.io/recipes/repeatmodeler/README.html)
## Minor
- [x] RepeatMasker open-4.0.9 -> [4.…
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Author Name: **Bert Klauninger** (Bert Klauninger)
Original Redmine Issue: 2476, https://redmine.open-bio.org/issues/2476
Original Date: 2008-03-26
Original Assignee: Bioperl Guts
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For some …
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I am trying to run IRescue on 10X samples that were aligned using STARSolo and I am getting an error I do not understand. I was wondering if you could help me.
My submission script is:
#!/bin/bas…
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Hi there,
Thanks very much for creating this software, I have been enjoying using it.
I have my counts table and have been conducting some differential expression analysis using edgeR and I have…
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Hi, TEtranscripts can quantify TE expression in the family levels using case and control groups. However, my samples were divided into several embryonic stages and were not suitable using TEtranscript…
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**Hi Dan,
I keep getting the following error when running step 2 of the pipeline:**
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Input is being processed as unpaired
Time: …
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Hi,
I'd like to try mcmc-date, but when I run `step4-mcmcdate` it seems like that there's something wrong with my `ghc` that I recently installed:
```
./step4-mcmcdate -f step4-strassert.conf -…
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I know that some peer tools of SDquest just hard-mask the sequences soft-masked by the RepeatMasker.
I would like to know how much resources would it take to identify all the SDs in the human geno…
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Dear Robert, I tried to run RepeatModeler with `-LTRStruct` option but it is stuck at "Running all-by-other comparisons" stage. No CPU/Memory usage at all. Do you know what could be going wrong? The v…
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Hi!
I am analyzing results from virusbreakend and noticed that the number of integrations in the summary output is different than that in the VCF. For example, the summary reported 57 integrations …