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Data Portal visualizations and custom data exploration
The Data Portal currently displays visualizations to guide the user to samples of interest. These
visualizations were created due to input for th…
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Hi Chris,
I am attempting to implement iRep for a single metagenomic reconstruction and a very large sam file (36 G). The default thread behaviour is listed a 6 threads, but top reveals I am only usi…
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**Deliverable this task is associated with**
_See Deliverables tab here: _
- [Add the Deliverable #]
**RACI**
_Tag people in their roles_
- Responsible: @sujaypatil96, @chienchi
- Acc…
aclum updated
1 month ago
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Hello,
Thank you for developing these suite of tools - I'm very interested in leveraging the piscem map-bulk and piscem-infer workflow to process some joint host-metagenomic sequencing data, and am h…
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Following the installation of Anvio (#23) we can now run it by activating the mamba environment `anvio-8`.
Lets create a new directory for the anvio run that we will use as the working dir.
```
m…
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### Operating System
Other Linux (please specify below)
### Other Linux
AlmaLinux 9.4
### Workflow Version
v1.2
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No …
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## Short description of the problem
Hello Anvio team!
I am trying to use anvio for automated bin refinement (which is generated outside anvio). I created contig db for each bin and profile db (u…
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### Description of the bug
Nextflow is checking Iphop database at the home directory even after specifying another db directory. This will cause error at Iphop step
### Command used and terminal out…
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**Submitting author:** @bluegenes (N. Tessa Pierce-Ward)
**Repository:** https://github.com/sourmash-bio/sourmash
**Branch with paper.md** (empty if default branch):
**Version:** v4.8.9
**Editor:** @…
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Using image: `quay.io/biocontainers/shovill:1.1.0--0`
Run with default options
Error message:
```
[shovill] Correcting errors in spades.fasta
[shovill] Running: pilon --genome spades.fasta…