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Hi!
We are planning to use qupath as a tool to teach histology to medical students at our university. We plan to make a self containing package of the image material that students can download for …
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Hi,
I'm trying to use MSFragger with Discoverer 2.4. I think I've followed all the directions but the processing nodes don't appear. The MagellanServer log is attached. It seems like there is a pr…
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Hello, I tried to put the toolbox in spm12 and run it, but the probabilistic atlas seems to be missing, so that the code would ended in error. Did I miss anything, or is there a place/website that I s…
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Hi, glad to see you guys doing great work in the battle for open pathology.
I can convert mrxs through the pipeline to ome-tiff, but I have yet to successfully get an isyntax image to make it out o…
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Start a document to discuss internally requirements for the All Data table results display.
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Study: Pediatric Brain Tumors - CBTTC
It looks like you can't push any of this study's files to Cavatica even though the user has access.
I have access to other dbgap studies (congenital heart …
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Hello,
Searching SequestHT with Philosopher in PD2.3 failed, though SequestHT with Percolator gave expected results.
I'm enclosing the Screenshot of event-log from PD. Please let me know how can I…
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From @kirbyju:
"Can TCIA share an anonymized MRI + STL for a single series with IDC team from the "Prostate MRI and Ultrasound With Pathology and Coordinates of Tracked Biopsy" dataset coming in f…
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The outputs for pathology images do not seem to make it back into the database, observed for both Peters algorithms, could have occured between May 21 and July 30.
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I have good DICOM files that don't work in this utility. I'm getting an error when selecting a study that says: "localhost:8000 says - Could not parse DICOM fort study, possible reason: DICOM is not p…