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When I use 'DoubletFinder' with seurat5 + BPCells, I got the Error:
sweep.res.list_obj packageVersion('DoubletFinder')
[1] ‘2.0.4’
> packageVersion('Seurat')
[1] ‘5.0.1’
> packageVersion('BPC…
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Hi,
I am afraid http://www.bioconductor.org/biocLite.R does not exist any more, does anyone know how to get around this?
Thanks in advance for your help.
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I've installed Celescope and run the test_script and everything worked. I've tried to run an analysis on one sample but I've got this error:
(celescope) andrea@Precision-7920-Tower:/hdd_a/andrea/Ce…
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i want run pbmc.md
adata RNA,adata ATAC=find neighbors(adata RNA,adata ATAC)
Traceback(most recent call last):File"",line 1,in
NameError: name 'find neighbors' is not defined
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 RNA molecules, descriptions using the r. coordina…
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It looks like FASTP is not able to detect *automatically* the adapter at all for miRNA-seq data.
For example, FASTP is not able to detect *automatically* the adapter in the SE FASTQ file from https…
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## Before you submit
Make sure your issue is not already in the [htsjdk issue tracker](https://github.com/samtools/htsjdk/issues?q=)
It was discussed in https://github.com/samtools/htsjdk/issues/1…
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Hi,
I ran ngsLD and am interested in the r2 from the EM algorithm. When I am looking at the values for some positions, the D is negative, Dprime and r2 are nan. Do you know what is happening or how…