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Is this scripts could be working with krakenuniq reports? If yes how to fix it please
combine_kreports.py -r *-krakenuniq-report.tsv -o COMBINED.KREPORT --display-headers
>>STEP 1: READING REPOR…
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I am getting following error:
Thu Feb 17 07:53:17 UTC 2022: Identifying viral sequences
Thu Feb 17 07:53:18 UTC 2022: Treating 0 reference sequences as viral sequences.
Thu Feb 17 07:53:58 UTC 20…
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HI,
I see there is an option work-on-disk to use less RAM. But when I tried to use this option, the software tell me this message:
```
srun --mem=300G --cpus-per-task=10 krakenuniq-build --db…
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Base query is a select count(*) on an empty table
ie select count(*) from sto_actions.
it works in isql (odbc sql)
the client is fb_isql (firebird command line sql)
set term ^^;
execute bloc…
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I'm attempting to follow along with [this part of the tutorial/wiki](https://github.com/FOI-Bioinformatics/flextaxd/wiki/8e.-Walkthrough-16S-GTDB-kraken2-database), to get a better understanding of ho…
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part of
- https://github.com/GenomicsStandardsConsortium/mixs/issues/813
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Hello
I have a problem with download and summarize NCBI Dump files as below:
> (base) amugae1210@pc101:~/tools/PhyloPlus$ ./phyloplus.sh -m download
cd /home1/amugae1210/tools/PhyloPlus
mkdir …
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```
In
http://code.google.com/p/psimi/source/browse/trunk/psimitab-parser/src/?r=369#sr
c%2Ftest%2Fresources%2Fmitab-samples, the first line in each sample file should
probably begin with '#'.
```
…
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Hello,
When I try importing pypath or omnipath after installing it, I keep getting AttributeError: 'NoneType' object has no attribute 'msg'. However, it works fine if I delete the the last line of …
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Hi there,
I'm continuing to troubleshoot the db-update process for a kraken2 database, and I've hit a wall at the kraken2_build step. The pipeline doesn't throw any errors; it just continues to run…