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**Description**
I was able to run 'bactopia initially, but all of the sudden it started giving me an "ERROR - Error creating Conda environment, retrying after short sleep." message with everything I …
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### Lesson Title
Introduction to Bioinformatics workflows with Nextflow and nf-core
### Lesson Repository URL
https://github.com/carpentries-incubator/workflows-nextflow
### Lesson Website URL
ht…
gperu updated
3 months ago
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Hi Developers,
I used fasterq-dump to download reads from SRA
_fasterq-dump --split-files -e 8 ERR024816_
And output files were named as ERR024816_1 and ERR024816_3
I was expecting _1 and _2 …
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Hi benjjneb,
I've downloaded the fastq.gz from NCBI pertaining to zymo_CCS_99.9.fastq.gz (SRR9089357), and going through the LRASms_Zyme.Rmd and i'm hung up on line ~92, err
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### Data Owner Name
Kernelogic
### Data Owner Country/Region
Canada
### Data Owner Industry
Life Science / Healthcare
### Website
https://singularity-browser.kernelogic.ca
### …
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Hello,
I'm attempting to include RNA-seq data into my run and am getting an array error. The sequences are locally hosted and not in NCBI. Included is the error I'm getting and the yaml file being …
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hello i use fastq-dump to get R1 and R2 files original format after prefetch.
fastq-dump --split-files -F
I have 3 questions:
the splitting by fastq-dump takes so much time. is there an argume…
Flu09 updated
7 months ago
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Hello, I have some samples from the SRA that I would like to include along with the local fastqs. I have downloaded the metadata sample sheet from the SRA as directed but I am curious how to combine i…
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Hi, I'm trying to download phenotype data files from dbGap using the prefetch tool but haven't had any success.
Command:
/Users/ks/sratoolkit.3.0.7-win64/bin/prefetch --ngc my_ngc_file.ngc my_cart…
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### Operating System
Other Linux (please specify below)
### Other Linux
Ubuntu 18.04
### Workflow Version
v1.0.1-ga6a1b69
### Workflow Execution
Command line
### EPI2ME Version
_No response_
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iaaka updated
5 months ago