-
it would be nice if species in a CRN (and reactions!?) were in a dataframe format so you could pull out certain species for example CRN.species(type="rna") = [rna_myrna1,rna_myrna2]
-
Hi,
I'm reaching out with a question related to the applicability of your models for tasks with a smaller dataset. Specifically, I'm interested in whether there are available scripts for fine-tuning…
-
Hi, I'm running example case using both RNA-seq and DNA-seq.
```shell
python /path/to/REDItoolDnaRna.py \
-i /path/to/rna.bam \
-j /path/to/dna.bam \
-o /path/to/my_output \
-f /path/to/refe…
-
I already projected data from the sketch to the RNA assday (full.reduction and clusters) but after annotating the sketched assay I wanted to repeat this step again and it gave me this error. I cannot …
Flu09 updated
2 months ago
-
I think there a lot of confusion about what we have and what were trying to do. I am sure I am not alone in this.
We 100% have RNA data. GUAC, not ATGC. T not U.
This is very easy to verify. Op…
-
Hi! Impressive work!
I was wondering whether your package would support demultiplexing bulk RNA-seq? And nanopore-based (i.e. not Illumina short) reads? Is support for other genomes (e.g. other mam…
-
你好,我在运行run步骤遇到了以下问题
这是我的运行代码
`~/miniconda3/envs/dnbc4tools/bin/dnbc4tools rna run --cDNAfastq1 /date/xiezhixing/cDNA/AS001_S1_L001_1.fq.gz --cDNAfastq2 /date/xiezhixing/cDNA/AS001_S1_L001_2.fq.gz --…
-
Hi team,
Thank you very much for developing this amazing tool! Do you think Velocyto is suitable for analyzing single nucleus RNA-seq dataset as well? The reason why I ask this is because single nucl…
-
#### Scientific goals
- Create correlation matrices for polyA samples and ribodeplete (stranded) samples using gene expression data.
- Generate gene outlier thresholds for ribodeplete samples.…
-
Hi,
I was wondering whether RNA velocity works well for 5' 10x data and if the results are similar to 3' data?
Many thanks,
Lucy