-
In the current [schema](https://github.com/ga4gh/ReadTaskTeam/blob/master/src/main/resources/avro/ga4gh.avdl), ReadGroup is an attribute of a Read only accessible with the `tags` field of Read (line 1…
-
Viruses are not in the GOLD table that forms the basis for sequenced genomes. Add them somehow.
-
Instead of depending on the hardcoded "ref" string for database abbreviation and likewise hardcoded URL for taxon set, "calculate" should read the load_databases table and create protein_count rows wi…
-
All the files to reproduce the bug (submission script, configuration file, reads, assembly output, and Ray src code) are located here (via sym links) :
/rap/nne-790-ab/projects/deraspem-raytest/Ray…
-
I get an error like
"ActiveRecord::RecordNotFound (Couldn't find SequencedGenome with ncbi_taxon_id=83333):
app/controllers/sequenced_genomes_controller.rb:32:in `ncbi_taxon_id2full_taxon_hierarch…
-
Reported-by Egon Ozer e-ozer@fsm.northwestern.edu
Operating system: OSX 10.6.8
K-mer length: 31
Version: v2.0.0-rc8
101 bp, paired-end, 3.27 M pairs per genome
There seems to be an intermittent prob…