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I'm trying to run your code and I saw the requirement is BLASR 2.0 but on the BLASR github page installing legacy BLASR isn't possible. So I installed the lastest version (BLASR 5.1) but that version …
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This [paper ](https://doi.org/10.1084/jem.20190179)defined anchoring residues for 6 of the MHC-I mice alleles, for 8, 9, 10 and 11-mer peptides, and found increased discrimination of immunogenic neoep…
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Hi,
I tried using your tool which runs perfectly, but none of my SVs are lifted.
I'm trying to lift SVs called with NanomonSV tool from nanopore data with T2T reference genome to hg38 to annotate …
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FYI: @selewis
Each phenotype has associated variants from SciGraph, in addition to Gene location. We would like to load a "gene" via a &select tag and then dynamically insert the variants. @nlwas…
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Dear developers,
I aligned my PacBio Hi-Fi reads to the reference genome with:
`minimap2 -ax map-hifi -y --MD -Y -t 24 | samtools view -h | samtools sort -o `
I then ran `trgt genotype` and `trgt…
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Hi all,
When I run `minion` for a specific sample I get an error that says:
```
Command failed:bcftools consensus -f results/minion/barcode72.preconsensus.fasta results/minion/barcode72.pass.v…
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I'm trying to run somaticseq_parallel on some samples VCFs to call the AI consensus.
The version for SomaticSeq is SomaticSeq v3.7.3. Version of XGBOOST is 2.0.2
I've run all mutation callers, then,…
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I am trying to generate a data frame (in .table format) from a VEP annotated multi sample vcf file. I am using the following code:
```
./vep -i ./input.vcf --offline --format vcf --assembly GRCh37…
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We are using vembrane on a multi-sample VCF files and got the following error message:
```
vembrane only supports records with one alternative allele.
Please split multi-allelic records first, fo…
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Hi @jzieve,
As a fix to #78, I might need to use a different csv beadpool manifest version than the orignal manifest used to generate idat/gtc. Many of new manifests will have fewer loci than the m…