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https://mp.weixin.qq.com/s/JYT0WbeAy3Rlkauj-RDJLw
ixxmu updated
4 months ago
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### Operating System
Other Linux (please specify below)
### Other Linux
Ubuntu 18.04
### Workflow Version
v1.0.1-ga6a1b69
### Workflow Execution
Command line
### EPI2ME Version
_No response_
…
iaaka updated
5 months ago
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We would like to add Drosophila melanogaster data to work with Julie Aspden and lab, starting with data from [Extensive translation of small Open Reading Frames](http://dx.doi.org/10.7554/eLife.03528.…
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**Describe the bug**
The rule `get_layout` in the SRA download workflow often fails. From nine more or less randomly selected libraries, in four cases, no output file (`SINGLE.info` or `PAIRED.info…
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Will be very helpful to have step-by-step instructions with screenshots in the documentation for creating an account, highlighting which fields will then be needed later in seqsender.
nbx0 updated
8 months ago
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Hi,
I am downloading fastq files using fasterq-dump for the accession number SRR7535543 (scRNA-seq, drop-seq). I successfully obtained the expected SRR7535543_1.fastq (CB+UMI, 21nt) and SRR7535543_…
cgob updated
7 months ago
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https://mp.weixin.qq.com/s/4JmnEOvb_d8TVdWpXDDizg
ixxmu updated
3 months ago
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As far as I understood, `vdb-validate` should be used to confirm the integrity of a file downloaded using `prefetch`. However, I noticed that the tool does not throw an error when the file is corrupt.…
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I'm having this problem when I'm running fasterq-dump. Although it indicates a lack of success with the warning "fasterq-dump quit with error code 3", it's not returning what the error is. I've tried …
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https://mp.weixin.qq.com/s/QiXjrM1njUkJM23-2qNxWQ
ixxmu updated
6 months ago