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Hello,
I tried to configure RepeatModeler 2.0.1 using conda installed packages. Others seem to work but the RMBlast path is always dropped by the `configure` script although it indicated "configure…
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Dear developer Team,
we have compared the bioconda Repeatmodeler package with a local installation of Repeatmodeler (with all dependencies).
The local installation of Repeatmodeler produced an o…
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I get an error running call_genotype when the script finds reshaped_repbase.fa empty. I am running it with empty files for -repremove and -pA_ME.
Could that be the issue?
2022-04-27 13:25:29,259…
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Hi! I'm currently facing an issue while running Decoil: after going through various samples, I've encountered a persistent problem with one specific sample. The process seems to be stuck at a particul…
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Hello!
I wanted to ask if there was any way to figure out why we might be getting low gene numbers from BRAKER (both BRAKER3 and BRAKER1 + BRAKER2 + TSEBRA had similarly low gene counts than what w…
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I'm trying to bootstrap EasyBuild following [the documentation](https://easybuild.readthedocs.io/en/latest/Installation.html#bootstrapping-procedure). I also watched [the demo](https://easybuild.read…
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$ perl ../EDTA.pl --genome genome.fa --cds genome.cds.fa --curatedlib ../database/rice7.0.0.liban --exclude genome.exclude.bed --overwrite 1 --sensitive 1 --anno 1 --evaluate 1 --threads 10 > EDTA.tes…
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Hello,
Every time I try to build a database with multiple fasta files from either a batch file or directory no sequences get added to the database. See run below (I cut out some of the genomes to …
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Dear Shujun,
Many thanks for the wonderful benchmarking tool lib-test.pl. I found a problem when I used it, which might be common for others.
For example:
perl ./lib-test.pl -std -tst
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EG appears to be stuck at Step 7 (although this is a big genome >6 GB)
```
Tue Jan 16 22:29:49 2024 Job finished! Check out wf-genome-FINAL.fasta.prep.finder.combine.scn
) (
…