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Good evening,
Thanks for developing this tool. I am struggling to use it because the latest versions of the dependencies r, IRanges, snow and ExomeCopy do not fit CONY. Could you give more details …
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**System**
Bare metal
DISTRO_NAME = 'endeavouros'
DISTRO_VER = 'notfound'
VARIANT_ID = 'notfound'
SESSION_TYPE = 'x11'
DESKTOP_ENV = 'gnome'
DE_MAJ_VER = '45'
**Any…
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Dear,
First of all, thanks for developing all tools around the AMR++ pipeline!
I have a few questions surrounding the steps after RGI main. So RGI main seems to work well, no error there. When I r…
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**Describe the bug**
SARS-CoV-2 variant BA.2.86 frequently has a 12 basepair insertion in Spike protein, which should be called as
MN908947.3 21608 . GTTAA GTCATGCCGCTGTTTAA
Ho…
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Hi Pyseer team!
I've found that `count_patterns.py` is outputting an unexpected number of patterns for the bonferroni correction. Specifically, the number of patterns is higher than expected, and t…
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### Proposal Details
I propose to add the function Backward to the package strings, as iterating over strings in reverse order is not trivial without allocating a new slice.
func Backward(s stri…
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**Description**
**Sub-lineage of:** KP.2.3 (= JN.1 + S:∆S31, S:H146Q, S:R346T, F456L, V1104L + ORF3a:K67N + ORf1a:T2283I)
**Earliest sequence:** 2024-3-12, France (travel to USA, California), EPI_IS…
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This lesson is meant to be a bit modular, so that it can be adapted to a few different workflows depending on user preference. That said, we do need a default one. Here are my thoughts:
**OTUs vs. …
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It is proposed to implement an operator matching against a common subset of regular expressions (ECMAScript ones) supported (stdlib (JS, C++, python, PHP) or a separate well-known lib (PCRE for C) ) b…
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In #9 we talked about updating to the new RxSwift `Single` stream.
I'll take a shot at this next time I'm using the library, otherwise anyone else is more than welcome to make a PR 😄