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https://mp.weixin.qq.com/s/QiXjrM1njUkJM23-2qNxWQ
ixxmu updated
6 months ago
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Hi.
I want to download Chm13 70x PacBio CLR data. But I only found HiFi data.
Could you give me more information?
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Hi,
I'm trying to extract scRNA-seq fastq files and this tool works great! However, I was wondering if there was an option to get all the files in a paired-end sample? I only am getting one file ba…
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Hi, I'm new to snakemake, and have no idea of submitting Scanneo2 jobs to HPC. Any instructions would be very helpful! Thanks!
Regards,
Xiao
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I installed an ARM64 conda environment and loaded:
conda install parallel-fastq-dump 'sra-tools>=3.0.0'
I used this execution:
cat SRR_Acc_List.txt | while read sample; do
parallel-fastq-dump…
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HI Bactopia team,
I use the following command in bactopia environment, locally, to test the pipeline:
```
bactopia \
--r1 ISS_1F1_P_R1.fastq.gz \
--r2 ISS_1F1_P_R2.fastq.gz \
--…
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Hi @rpetit3
I am very excited to use the fastq-dl tool to download some SRA data but I am having some issues.
When I run the following command:
`fastq-dl SRR12333278 SRA`
I get the following…
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Could I please receive credentials for access to Gannet? I have Raven access but have not yet accessed Gannet. Thank you!
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### Description of the bug
Hi I'm trying to use the fetchngs pipeline and am first testing the pipeline on my institution's HPC.
### Command used and terminal output
```console
# My input
nextflo…
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I have fastq-dump this run ERR4575751, and the fastq file is much smaller then .sra file ,why? do i miss some data?
And, could I trust the fastq file decompressed?