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Hi David,
Thanks for this amazing tool!
I was just trying to run OrthoFinder (newest version) on some of the proteins from the EukProt database. These are often derived from transcriptomes, so h…
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Hi there!
I ran into an issue while trying to run EukCC via singularity.
I pulled the image and downloaded the database (tried both versions 1.1 and 1.2 with the same result):
```
wget http:/…
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In several places for postgres, we `CREATE SEQUENCE ...`. We do this for every table which uses the sequence, partly for clarity and partly so we don't assume someone else has done it for us.
Inste…
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[Kaiju](https://www.nature.com/articles/ncomms11257) finds maximum (in-)exact matches on the **protein-level** using the Burrows–Wheeler transform.
**TO DO**
Compare the Kaiju classification to K…
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We should aim to create an R script that does the work of https://github.com/jonchang/phlawd_db_maker, in the sense of creating a phlawd SQLite database. The current phlawd_db_maker software is insuff…
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Hi,
I have 8 pairs of shotgun fastq sequences. When I run the classification code i get the following error -
Loading database information... done.
0 sequences (0.00 Mbp) processed in 0.010s (0.0 K…
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Hello developers, I don’t know where to download TE_DB such as homo sapiens. Can you provide a way to download TE DB?
Thank you
TE_DB: "/path/to/database_TE.fasta" #Database of TE (…
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Hi Rockstars,
This is a list of proposed Hands-on tasks. If you're new to StarRocks and eager to engage with the community, here are some issues that are well-suited for you to dive into :) These …
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I'm using Diamond clustering as part of an alignment strategy. This means I can run clustering over millions of files across a dataset. I run 32 instances of diamond in parallel. The CPU has 64c/128p …
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Hi! Thanks so much for this package.
I am working some rna-seq in the maine species without genome
Your guide presents all downstream analysis example and R scripts with genome index, so how to …