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For an added layer of validation
e.g. NIfTI file, MINC file,...
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python3 ui/egapx.py -dl -lc ../EGAPx_local
!!WARNING!!
This is an alpha release with limited features and organism scope to collect initial feedback on execution. Outputs are not yet complete and…
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Hey,
I realized that downloading the phage genomes from NCBI via (eutils.ncbi.nlm.nih.gov) is not working with the perl module (LWP::SIMPLE). I'm not sure why, is it because https ?? I could solve …
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### Prerequisites
- [x] make sure you're are using the latest version by `taxonkit version`
- [x] read the [usage](http://bioinf.shenwei.me/taxonkit/usage/)
### Describe your issue
In the do…
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Hello,
I have a problem running the following command : `m2m recon -g rocks -o rocks_m2m -c 16`
Here is the error message :
```
######### Running metabolic network reconstruction with Pathway T…
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Currently, there is no example of aggregating files AND associated metadata. For instance, in many/most nf-core pipelines the process outputs are something like:
```
output:
tuple val(meta), path…
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Hi
make-blobs.py ends with this:
[ERROR] : BLAST output does not seem to be in the right format ('6 qseqid staxids bitscore ... ')
Here is my blast command:
ncbi-blast-2.2.31+/bin/blastn -task meg…
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Hello, I have a data set consisting of 64 Kraken2 .report files and 1 sample_data.csv file. Each file can be uploaded successfully in its individual form, but when I try to upload all files at the sam…
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Looking at the Bracken source code, I see that counts do get down to the level of individual genomes. But this level of count data is not reported to the user.
Seems like it wouldn't be that much a…
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Hello！Chenxi，@c-zhou
When I run the code
`syncasm -k 1001 -c 100 -t 48 -o green green.fastq`
I got a error：
![6b87038b96b0c9a89580983860337bf](https://github.com/c-zhou/oatk/assets/55218372/fd8c…