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Running the Pipeline-16S using the following command, nextflow run, but instead of producing the output we expected according with the information in the webpage, it produced several subdirectories th…
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### Title
16s Metagenomic analysis of Gut Microbiome
### Leaders
Dipankar Bachar
### Collaborators
_No response_
### Brainhack Global 2022 Event
Brainhack Marseille
### Projec…
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Hi Chi
Firstly thank you very much for microeco package.
I try to run the relative abundance for dominant functions using the package's dataset using the following script.
library(microeco)
fun_16…
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We see occasional (anecdotally
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Hi, I ran the command "./ident-16s hpsM15.fa.gz", the error was listed as follows“# 16S_rRNA_1_Origin_hpsM15 (uf:cut:1:470)
Error: NCBI C++ Exception:
T0 "/build/ncbi-blast+-S1iyIZ/ncbi-blast+-2…
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Hi,
I'm trying to run dadaist2 on macOS 14.5, but unfortunately I am unable to replicate the tutorial.
I installed dadaist2 using:
`mamba create -n dadaist -c conda-forge -c bioconda dadaist2`
W…
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I am doing 16S rna amplicon based ONT sequencing.
My target region is only of 1kb to 2kb in length.
Per sample reads is around 50K.
Will HEERO give me good error filtered estimates ?
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**Session 1**
Important links:
- Module website: https://kviljoen.github.io/H3ABioNet_16S/
- DADA2 nextflow pipeline: https://github.com/grbot/16S-rDNA-dada2-pipeline
- Instructions on running N…
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Would it be possible to add San Lorenzo de la Parilla to the weather channel?
https://www.google.es/maps/place/16770+San+Lorenzo+de+la+Parrilla,+Cuenca/@39.8498743,-2.3598287,15z/data=!4m6!3m5!1s0xd6…
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Mini16S protocol is a newer protocol that reduces cost and time. It is not currently supported by LabControl.
This description is a placeholder issue to be fleshed out at a later date.